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use CGI;

...
<input type='hidden' name='sequence' value='@{ [ CGI->escapeHTML($whol
+e_sequence) ] }'/>
<input type='submit' value='View Applet in new window'/></form>
};

use CGI;

...
print CGI->hidden( 'header',   $query );
print CGI->hidden( 'sequence', $whole_sequence );
print qq{<input type='submit' value='View Applet in new window'/></for
+m>};