Thank you, but does this incorporate both $nee1 and $nee2 in this case where there are 2 sequences to search for?
You said:
$nee1 = AGGA
$nee2 = CGCCAC
#What I want is the following in regular expression:
$hay =~ /($nee1)T[ATGC]($nee2)/
I used: my $nee = 'AGGATACGCCAC';
## $nee1 ^^^^
## T? ^^
## $nee2 ^^^^^^
What do you think the answer to your question is?
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