Re: create a binary matrix

Can you please give us an idea of what data is in the files, and an example of what you would like your output to look like?

Cheers,
R.

Pereant, qui ante nos nostra dixerunt!

Comment on Re: create a binary matrix Download Code

Replies are listed 'Best First'.
Re^2: create a binary matrix by Anonymous Monk on Oct 01, 2016 at 07:14 UTC
there are set of reads in the files but that has nothing to do with the output because with those I have created p.txt. The output I want is like: gene NC_002755.fq NC_009525.fq NC_009565.fq NC_012943.fq N +C_016768.fq NC_016934.fq NC_017026.fq NC_017522.fq NC_017 +523.fq NC_017524.fq NC_017528.fq NC_018078.fq NC_018143.f +q NC_020089.fq NC_020559.fq NC_021054.fq NC_021192.fq +NC_021193.fq NC_021194.fq NC_021251.fq NC_021740.fq NC_02 +2350.fq (3R)-hydroxyacyl-ACP dehydratase subunit HadA 0 0 0 0 0 + 0 0 0 0 0 0 0 0 0 0 0 1 0 +0 0 0 0 (3R)-hydroxyacyl-ACP dehydratase subunit HadB 0 0 0 0 0 + 0 1 0 0 0 0 0 0 0 0 0 0 0 +0 0 0 0 (dimethylallyl)adenosine tRNA methylthiotransferase 1 1 1 +0 0 1 0 0 0 0 0 0 0 0 0 0 0 + 0 0 0 0 [download] the result should print 1 if the filename matches else print 0	[reply] [d/l]

Replies are listed 'Best First'.

Re^2: create a binary matrix
by Anonymous Monk on Oct 01, 2016 at 07:14 UTC


gene NC_002755.fq    NC_009525.fq    NC_009565.fq    NC_012943.fq    N
+C_016768.fq    NC_016934.fq    NC_017026.fq    NC_017522.fq    NC_017
+523.fq    NC_017524.fq    NC_017528.fq    NC_018078.fq    NC_018143.f
+q    NC_020089.fq    NC_020559.fq    NC_021054.fq    NC_021192.fq    
+NC_021193.fq    NC_021194.fq    NC_021251.fq    NC_021740.fq    NC_02
+2350.fq
(3R)-hydroxyacyl-ACP dehydratase subunit HadA    0    0    0    0    0
+    0    0    0    0    0    0    0    0    0    0    0    1    0    
+0    0    0    0
(3R)-hydroxyacyl-ACP dehydratase subunit HadB    0    0    0    0    0
+    0    1    0    0    0    0    0    0    0    0    0    0    0    
+0    0    0    0
(dimethylallyl)adenosine tRNA methylthiotransferase    1    1    1    
+0    0    1    0    0    0    0    0    0    0    0    0    0    0   
+ 0    0    0    0
[download]

[reply]
[d/l]