My main question is how do I change my unix command so that I can go through a list of query and genome sequences and return the tblastn results for each?

You don't (assuming you are asking here because you want to learn how to use Perl). You call it in a loop.

See for and while, foreach, perlsyn.

Hope this helps!


The way forward always starts with a minimal test.

In reply to Re: tblastn unix by 1nickt
in thread tblastn unix by Nicpetbio23!

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