I added some print statements, and now I am able to get the required contents in the output files. Thanks a lot!

Also, I have some mixed fasta header data. For eg: 

>aw1.a1 bhi|tn|56564 pairs:40098
ATGCTAGATGCTAGCTAGCTAGCACTGAT
CGATGCTAGCGTAGTCAGCTGATGCTGTA
CGATGCTAGTCGTACG
>aw1.b1 bhi|tn|56565 pairs:40099
CGAGCTAGTCGTAGTCGTGATGCTGATTA
CGATGCTAGTCGTAGCTAGCTGATGCTGC
CGATGCTAGTCGTAGTC
>dd3.a1 bhi|tn|56566 pairs:40100
CGTAGTCGTAGTCGTAGTCGATGCTGATG
GCTAGTCGATGCTAGCTAGTCGATGCTGG
CGATGCTGAT
>dd3.b1 bhi|tn|56567 pairs:40101
CGTAGTCGTAGTCGTACGTAGTCGTGAGT
CGATTATTTAGGAGGGACAAGGATAGTA
>hg5.a1 bhi|tn|56568 pairs:40102
CGTAGTCGTAGTCTAGTCGTGATGCTAGA
>dfd6.a1 bhi|tn|56569 pairs:40103
CGATGCTACGTACGTAGTCAGTCGTGATG
AATTAGAGCAGATAGAGGGGGAAAGGGTT
AAACCCC
>ght5.a1 bhi|tn|56564
ATGCTAGTCGTAGTCGATGTCGTAGCTGT
CGTAGCTGATGCATGCTAGTCCGTAGCTG
>tgt6.X bhi|tn|56564 pairs:56478
CGTAGCTGATGCTGATGCTGATGCTGTGT
CGTAGCTGATGCTGATGCTTAGCTGATGC
CGTAGCTGATCGTAGCTATCGTAGCTAGG
>tgt6.Y bhi|tn|56564 pairs:56479
CGTAGTCGTAGTCGTAGTCGATGCTAGTG
CGATGCTGATCGTGATGCTATGCTAGCGT
CAGTCGTAGTCGTACGTAGTCGTGTGTGG

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I want to write the complete header line (starting with '>') in my output files.

Can I use the split function to divide the header line into an array and then try printing it?

Thanks!

In reply to Re^4: Compare hash with arrays and print by ad23
in thread Compare hash with arrays and print by ad23

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