I am sorry I don't understand your question!
You said that the query file contains 2 million queries.
You said that the maximum number is much less than 2**16, and your in your sample data all the numbers are less than 1000.
If all the numbers are less than 1000 and you have 2 million of them, then on average, each query will be duplicated 2000 times.
Which suggests that if you pre-processed your queries file to remove the duplication, you would end up with 1000 queries only and so would reduce the amount of work to do by 3 orders of magnitude. Ie. Your processing would be 2000 times faster.
All of which suggests either your queries are more than just a single integer, or the range is much larger. Which is it?
Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.
"Science is about questioning the status quo. Questioning authority".
In the absence of evidence, opinion is indistinguishable from prejudice.
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