Hi Monks ,
I have two files like this
1st file
>qppq
ATATATTTATTATTA
TATATATTATATTAT
TA
>lsl
ATTATTATTATTATT
AGGAGGAG
2nd file
>dfj
TATTATTATTTT
ATAT
>ghg
ATATATAT
I want to have an output like this
>qppq
ATATATTTATTATTA
TATATATTATATTAT
TA
>dfj
TATTATTATTTT
ATAT
============
>lsl
ATTATTATTATTATT
AGGAGGAG
>ghg
ATATATAT
===========
#!/usr/bin/perl -w
use strict;
my $file1=$ARGV[0];
my $file2=$ARGV[1];
open(FILE1,"$file1");
open(FILE2,"$file2");
while (my $line1=<FILE1>){
my $line2=<FILE2>;
if($line1=~/^>/){
print "$line1";
do{
$line1=<FILE1>;
print $line1;
}until $line1=~/^>/;
print "$line2";
do{
$line2=<FILE2>;
print $line2;
}until $line2=~/^>/;
}
print "==========\n";
}
But this code is not working can somebody help me in this
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