I want to implement a GA in perl to finding motif in some unaligned sequence. for example,ACCTACCTAGAGAA,ACCTACCTAGAGTA,CCTATGAATATAAG. As the result i prefer to go the motif in IUPAC form. About the fitness function,the simpler the better. Could u help me?I want to get the code of this program. I just wanna get the whole perl program to implement motif finding.I@have read the paper called FMGA.It could be so helpful,if someone can implement the FMGA(finding motif by GA).I need the code! Thank you so much.

In reply to genetic algorithm for motif finding by shakehands

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