Most likely it means that on line 197 of the file
/usr/lib/perl5/site_perl/5.8.0/Bio/SearchIO/Writer/TextResultWriter.pm,
it is attempted to call the method 'algorithm' on something
that isn't a package or object references. Usually it means
you have something like:
$obj -> algorithm ();
where $obj is undefined, or an otherwise plain scalar. Now, I
expect you aren't working on TextResultWriter.pm, but on some
file that calls (directly, or indirectly) a function in
TextResultWriter.pm that contains this line. Then it's very
well possible you aren't passing the appropriate arguments.
Check your arguments. Make sure you pass objects where the
function expects objects.
But of course, this is mostly guessing. You aren't showing
any code.
Abigail
Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
Read Where should I post X? if you're not absolutely sure you're posting in the right place.
Please read these before you post! —
Posts may use any of the Perl Monks Approved HTML tags:
- a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
| |
For: |
|
Use: |
| & | | & |
| < | | < |
| > | | > |
| [ | | [ |
| ] | | ] |
Link using PerlMonks shortcuts! What shortcuts can I use for linking?
See Writeup Formatting Tips and other pages linked from there for more info.