Looks to me like the problem is that your editcontig function changes the length of the string...

$rawseq =~ s/9//g;

[download]
reduces the length of the string by 1 character... Maybe you should substitute a space or something?

Trek

In reply to Re: substr is behaving differently with small vs large strings by TrekNoid
in thread substr is behaving differently with small vs large strings by wadunn

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