Perhaps the following would be of interest:

Also, XS Mechanics, which discusses the coding of Align::NW, and has some excellent resources on the Needleman-Wunsch algorithm.


Update per biohisham's suggestion: See also BioPerl's implementation of the Smith–Waterman algorithm, at BioPerl's SimpleAlign documentation, or at CPAN's: Bio::SimpleAlign.

HTH,

planetscape

In reply to Re: structural alignment by planetscape
in thread structural alignment by modoc.kesner

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