Re^4: array references

i have two file.one is 'result'

AAA41250.1...........PF0000005.3 PF11001.3 PF00389.24 PF10417.3
AAA60129.1...........PF00389.24 PF11001.3
CAA00125.1...........PF00002.3
CAA79652.1...........
CAB58510.1...........PF00389.24 PF0000005.3
[download]

and i have another file 'domainlist'

PF0000005.3
PF11001.3
PF00389.24
PF10417.3
PF00002.3
[download]

as you said i am already studying perleftut, but still nothing :-(

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Re^5: array references by Anonymous Monk on Jul 29, 2011 at 20:48 UTC
for example PF0000005.3 has two neighbor PF11001.3 in first line and PF00389.24 in fifth line.	[reply]
Re^6: array references by kennethk (Abbot) on Jul 29, 2011 at 22:48 UTC
Read through Basic debugging checklist. I'd bet the issue is that `@AoA` doesn't contain what you think it does. Specifically, because there is no white space between what looks like the first two entries in `AAA41250.1...........PF0000005.3 PF11001.3 PF00389.24 PF10417.3`, the first element (`PF0000005.3`) is getting dropped in your split. Perhaps `my @chunks = split /\s+\|\.{2,}/;` would work better for you. I suspect that this is not the balance of your bugs, but if you follow the steps in Basic debugging checklist and use Data::Dumper judiciously, you should be able to get this resolved.	[reply] [d/l] [select]