Re^5: array references

for example PF0000005.3 has two neighbor PF11001.3 in first line and PF00389.24 in fifth line.

Comment on Re^5: array references

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Re^6: array references by kennethk (Abbot) on Jul 29, 2011 at 22:48 UTC
Read through Basic debugging checklist. I'd bet the issue is that `@AoA` doesn't contain what you think it does. Specifically, because there is no white space between what looks like the first two entries in `AAA41250.1...........PF0000005.3 PF11001.3 PF00389.24 PF10417.3`, the first element (`PF0000005.3`) is getting dropped in your split. Perhaps `my @chunks = split /\s+\|\.{2,}/;` would work better for you. I suspect that this is not the balance of your bugs, but if you follow the steps in Basic debugging checklist and use Data::Dumper judiciously, you should be able to get this resolved.	[reply] [d/l] [select]

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Re^6: array references
by kennethk (Abbot) on Jul 29, 2011 at 22:48 UTC

Basic debugging checklist

@AoA

AAA41250.1...........PF0000005.3 PF11001.3 PF00389.24 PF10417.3

PF0000005.3

split

my @chunks = split /\s+|\.{2,}/;

I suspect that this is not the balance of your bugs, but if you follow the steps in Basic debugging checklist and use Data::Dumper judiciously, you should be able to get this resolved.

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